GUI Details
¶
Getting Started
Starting ISOLDE
Preparing a model for simulation
Adding maps
Visualisation and Navigation
General layout
Zooming and Panning
Adjusting the maps
Selecting atoms
Navigating and Masking
Basic simulation controls
Starting a simulation
Dealing with severe clashes
Dealing with unrecognised residues
General simulation controls
Basic interaction
Adjusting map weightings
Adjusting temperature and trajectory smoothing
Manipulating your model
Overview
Peptide flip and rotamer adjustment buttons
The Restraints tab
Monitoring the quality of your model
Peptide Bond Validation
The Ramachandran plot
Rotamer Validation
Clashes
Unparameterised Residues
Identifying problem “hotspots”
Overview
The ISOLDE menu
Model Building
Prep
Table of Contents
Home
The ISOLDE GUI
What is ISOLDE all about?
System Requirements
GUI Details
Tutorials
Adaptive Restraint Schemes
Remote Control Options
The ISOLDE Command Line
ISOLDE Python API
License
Citing ISOLDE
Contact Info
Related Topics
Documentation overview
The ISOLDE GUI
Previous:
System Requirements
Next:
Getting Started
Quick search